Preheat oven to 350 degrees Fahrenheit. Line a baking pan with Gefen Parchment Paper. 

Reduce the mixer speed and add flour, baking soda and salt, mixing until combined. Add cocoa powder and mix until incorporated. Stir in the pomegranate seeds and chocolate chips.

Scoop the dough by tablespoons to form small balls. Bake on the prepared pans for nine to 10 minutes.

With an electric mixer, cream together the margarine, white and brown sugars, eggs and vanilla. Beat the mixture on medium-high for three to five minutes until fluffy.